recipe r-bcbiornaseq

Quality control and differential expression for bcbio RNA-seq experiments.

Homepage

https://github.com/hbc/bcbioRNASeq

License

MIT

Recipe

/r-bcbiornaseq/meta.yaml

package r-bcbiornaseq

(downloads) docker_r-bcbiornaseq

Versions

0.2.9-0, 0.2.8-0, 0.2.7-0, 0.2.4-0, 0.2.4a-0, 0.2.3a-0, 0.1.2-0

Depends bioconductor-degreport

Depends bioconductor-deseq2

Depends bioconductor-edger

Depends bioconductor-genomeinfodbdata

Depends bioconductor-summarizedexperiment

Depends bioconductor-tximport

Depends bioconductor-vsn

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-bcbiobase

Depends r-ggrepel

Depends r-hexbin

Depends r-pbapply

Depends r-rmarkdown

Depends r-tidyverse

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-bcbiornaseq

and update with:

conda update r-bcbiornaseq

or use the docker container:

docker pull quay.io/biocontainers/r-bcbiornaseq:<tag>

(see r-bcbiornaseq/tags for valid values for <tag>)