- recipe r-bisquerna
Provides tools to accurately estimate cell type abundances from heterogeneous bulk expression.
- Homepage
- License
GPL3 / GPL-3.0-only
- Recipe
A reference-based method utilizes single-cell information to generate a signature matrix and transformation of bulk expression for accurate regression based estimates. A marker-based method utilizes known cell-specific marker genes to measure relative abundances across samples. For more details, see Jew and Alvarez et al (2019) <doi:10.1101/669911>.
- package r-bisquerna¶
-
- Versions
1.0.5-0
,1.0.4-2
,1.0.4-1
,1.0.4-0
,1.0.3-1
,1.0.3-0
,1.0.2-0
,1.0.1-0
,1.0-1
,1.0.5-0
,1.0.4-2
,1.0.4-1
,1.0.4-0
,1.0.3-1
,1.0.3-0
,1.0.2-0
,1.0.1-0
,1.0-1
,1.0-0
- Depends
r-base
>=4.1,<4.2.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install r-bisquerna
and update with:
conda update r-bisquerna
or use the docker container:
docker pull quay.io/biocontainers/r-bisquerna:<tag>
(see r-bisquerna/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/r-bisquerna/README.html)