recipe r-calder2

CALDER is a Hi-C analysis tool for the analysis of hierarchical chromatin interactions

Homepage:

https://github.com/CSOgroup/CALDER2

License:

MIT / MIT

Recipe:

/r-calder2/meta.yaml

package r-calder2

Versions:

0.3-1,  0.3-0,  0.2-0,  0.1-0

Depends:

• bioconductor-genomicranges >=1.36.0

• bioconductor-rhdf5 >=2.28.0

• cooler

• r-ape >=5.3

• r-base >=4.2,<4.3.0a0

• r-data.table >=1.12.2

• r-dendextend >=1.12.0

• r-doparallel >=1.0.15

• r-factoextra >=1.0.5

• r-fields >=9.8.3

• r-fitdistrplus >=1.0.14

• r-ggplot2 >=3.3.5

• r-igraph >=1.2.4.1

• r-maptools >=0.9.5

• r-matrix >=1.2.17

• r-optparse

• r-r.utils >=2.9.0

• r-rarpack >=0.11.0

• r-rcpp

• r-rcpparmadillo

• r-strawr >=0.0.9

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-calder2

and update with:

conda update r-calder2

or use the docker container:

docker pull quay.io/biocontainers/r-calder2:<tag>

(see r-calder2/tags for valid values for <tag>)

Download stats

Link to this page

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