recipe r-cdseq

Estimate cell-type-specific gene expression profiles and sample-specific cell-type proportions simultaneously using bulk sequencing data. Kang et al. (2019) <doi:10.1371/journal.pcbi.1007510>.

Homepage

https://github.com/kkang7/CDSeq_R_Package

License

GPL / GPL-3

Recipe

/r-cdseq/meta.yaml

Links

doi: 10.1371/journal.pcbi.1007510

package r-cdseq

Versions

0-1,  0-0

Depends

• bioconductor-biobase

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• r-base >=4.1,<4.2.0a0

• r-clue

• r-dirmult

• r-doparallel

• r-dplyr

• r-foreach

• r-ggplot2

• r-ggpubr

• r-gplots

• r-harmony

• r-iterators

• r-magrittr

• r-mass

• r-matrix

• r-matrixstats

• r-pheatmap

• r-qlcmatrix

• r-rcpp >=1.0.3

• r-rcppthread

• r-rlang

• r-seurat

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-cdseq

and update with:

conda update r-cdseq

or use the docker container:

docker pull quay.io/biocontainers/r-cdseq:<tag>

(see r-cdseq/tags for valid values for <tag>)

Download stats

Link to this page

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