recipe r-chromium

Toolkit for 10X Genomics Chromium single cell data.

Homepage:

https://r.acidgenomics.com/packages/chromium/

Developer docs:

https://github.com/acidgenomics/r-chromium

License:

GPL / AGPL-3.0

Recipe:

/r-chromium/meta.yaml

package r-chromium

Versions:

0.2.1-0

Depends:

• bioconductor-rhdf5 >=2.42.0

• bioconductor-s4vectors >=0.36.0

• bioconductor-singlecellexperiment >=1.20.0

• bioconductor-summarizedexperiment >=1.28.0

• r-acidbase >=0.6.12

• r-acidcli >=0.2.7

• r-acidexperiment >=0.4.5

• r-acidgenerics >=0.6.6

• r-acidgenomes >=0.4.7

• r-acidplyr >=0.3.6

• r-acidsinglecell >=0.3.4

• r-base >=4.2,<4.3.0a0

• r-goalie >=0.6.8

• r-matrix >=1.5.1

• r-pipette >=0.10.3

• r-stringi >=1.7.12

• r-syntactic >=0.6.4

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-chromium

and update with:

conda update r-chromium

or use the docker container:

docker pull quay.io/biocontainers/r-chromium:<tag>

(see r-chromium/tags for valid values for <tag>)

Download stats

Link to this page

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