recipe r-conos

Wires together large collections of single-cell RNA-seq datasets, which allows for both the identification of recurrent cell clusters and the propagation of information between datasets in multi-sample or atlas-scale collections. 'Conos' focuses on the uniform mapping of homologous cell types across heterogeneous sample collections. For instance, users could investigate a collection of dozens of peripheral blood samples from cancer patients combined with dozens of controls, which perhaps includes samples of a related tissue such as lymph nodes. This package interacts with data available through the 'conosPanel' package, which is available in a 'drat' repository. To access this data package, see the instructions at <https://github.com/kharchenkolab/conos>. The size of the 'conosPanel' package is approximately 12 MB.

Homepage:

https://github.com/kharchenkolab/conos

License:

GPL3 / GPL-3.0-only

Recipe:

/r-conos/meta.yaml

package r-conos

(downloads) docker_r-conos

Versions:

1.5.0-11.5.0-01.4.9-01.4.8-01.4.7-01.4.6-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-conos

and update with:

conda update r-conos

or use the docker container:

docker pull quay.io/biocontainers/r-conos:<tag>

(see r-conos/tags for valid values for <tag>)

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