recipe r-consensustme

ConsensusTME is a consensus based approach to generating cancer specific gene sets for multiple cell types found within the tumour microenvironment. This package allows access to these genesets and provides a wrapper for using these gene sets with various statistical frameworks to generate normalised enrichment scores. These can be used to identify relative quantities of cell types across multiple samples.

Homepage:

https://github.com/cansysbio/ConsensusTME

License:

GPL / GPL-3

Recipe:

/r-consensustme/meta.yaml

Links:

doi: 10.1158/0008-5472.CAN-18-3560

package r-consensustme

Versions:

0.0.1.9000-0

Depends:

• bioconductor-gseabase

• bioconductor-gsva

• bioconductor-singscore

• r-base >=4.1,<4.2.0a0

Required By:

• r-immunedeconv

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-consensustme

and update with:

conda update r-consensustme

or use the docker container:

docker pull quay.io/biocontainers/r-consensustme:<tag>

(see r-consensustme/tags for valid values for <tag>)

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