- recipe r-consensustme
ConsensusTME is a consensus based approach to generating cancer specific gene sets for multiple cell types found within the tumour microenvironment. This package allows access to these genesets and provides a wrapper for using these gene sets with various statistical frameworks to generate normalised enrichment scores. These can be used to identify relative quantities of cell types across multiple samples.
- Homepage:
- License:
GPL / GPL-3
- Recipe:
- Links:
- package r-consensustme¶
-
- Versions:
0.0.1.9000-1
,0.0.1.9000-0
- Depends:
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install r-consensustme
and update with:
conda update r-consensustme
or use the docker container:
docker pull quay.io/biocontainers/r-consensustme:<tag>
(see r-consensustme/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/r-consensustme/README.html)