recipe r-cssam

Cell-type specific differential expression of a microarray experiment of heterogeneous tissue samples, using SAM.

Homepage

https://github.com/shenorrLab/csSAM

License

GPL / LGPL

Recipe

/r-cssam/meta.yaml

Links

doi: 10.1038/nmeth.1439

package r-cssam

Versions

1.4-2,  1.4-1,  1.4-0,  0-0

Depends

• bioconductor-biobase >=2.50.0

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• r-base >=4.0.5

• r-formula >=1.2_4

• r-ggplot2 >=3.3.5

• r-pkgmaker >=0.32.2

• r-plyr >=1.8.6

• r-rcpp >=1.0.7

• r-rngtools >=1.5.2

• r-scales >=1.1.1

• xbioc >=0.1.19

Required By

• r-bseqsc

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-cssam

and update with:

conda update r-cssam

or use the docker container:

docker pull quay.io/biocontainers/r-cssam:<tag>

(see r-cssam/tags for valid values for <tag>)

Download stats

Link to this page

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