recipe r-dimsum

An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies

Homepage:

https://github.com/lehner-lab/DiMSum

License:

MIT

Recipe:

/r-dimsum/meta.yaml

package r-dimsum

Versions:

1.3-1,  1.3-0,  1.2.11-1,  1.2.11-0,  1.2.10-0,  1.2.9-0,  1.2.8-0,  1.2.7-2,  1.2.7-1, 

1.3-1,  1.3-0,  1.2.11-1,  1.2.11-0,  1.2.10-0,  1.2.9-0,  1.2.8-0,  1.2.7-2,  1.2.7-1,  1.2.7-0,  1.2.5-0,  1.2.0-0,  1.1.4-0,  1.1.3-0

Depends:

• bioconductor-biostrings

• bioconductor-iranges

• bioconductor-shortread

• cutadapt 2.4.*

• fastqc >=0.11.3

• pandoc >=1.17.2

• r-base >=3.6,<3.7.0a0

• r-cairo

• r-cowplot

• r-data.table

• r-ggally

• r-ggplot2

• r-gridextra

• r-hexbin

• r-optparse

• r-plyr

• r-reshape2

• r-rmarkdown

• r-seqinr

• r-stringr

• starcode >=1.3

• vsearch >=2.17

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-dimsum

and update with:

conda update r-dimsum

or use the docker container:

docker pull quay.io/biocontainers/r-dimsum:<tag>

(see r-dimsum/tags for valid values for <tag>)

Download stats

Link to this page

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