recipe r-exomedepth

Calls copy number variants (CNVs) from targeted sequence data, typically exome sequencing experiments designed to identify the genetic basis of Mendelian disorders.

Homepage:

https://CRAN.R-project.org/package=ExomeDepth

License:

GPL3 / GPL-3

Recipe:

/r-exomedepth/meta.yaml

package r-exomedepth

Versions:

1.1.16-1,  1.1.16-0,  1.1.15-4,  1.1.15-3,  1.1.15-2,  1.1.15-1,  1.1.15-0,  1.1.12-0,  1.1.10-4, 

1.1.16-1,  1.1.16-0,  1.1.15-4,  1.1.15-3,  1.1.15-2,  1.1.15-1,  1.1.15-0,  1.1.12-0,  1.1.10-4,  1.1.10-3,  1.1.10-2,  1.1.10-0

Depends:

• bioconductor-biostrings

• bioconductor-genomicalignments

• bioconductor-genomicranges >=1.23.0

• bioconductor-iranges

• bioconductor-rsamtools

• libgcc-ng >=12

• libgfortran-ng

• libgfortran5 >=10.4.0

• libstdcxx-ng >=12

• r-aod

• r-base >=4.2,<4.3.0a0

• r-dplyr

• r-magrittr

• r-vgam >=0.8.4

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-exomedepth

and update with:

conda update r-exomedepth

or use the docker container:

docker pull quay.io/biocontainers/r-exomedepth:<tag>

(see r-exomedepth/tags for valid values for <tag>)

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