recipe r-floral

Log-ratio Lasso regression for continuous, binary, and survival outcomes with (longitudinal) compositional features. See Fei and others (2024) <doi:10.1016/j.crmeth.2024.100899>.

Homepage:

https://vdblab.github.io/FLORAL/

License:

GPL-3.0-or-later

Recipe:

/r-floral/meta.yaml

package r-floral

versions:

0.4.0-0

depends bioconductor-phyloseq:

depends bioconductor-survcomp:

depends r-ast2ast:

depends r-base:

>=4.4,<4.5.0a0

depends r-caret:

depends r-doparallel:

depends r-dorng:

depends r-dplyr:

depends r-foreach:

depends r-ggplot2:

depends r-glmnet:

depends r-msm:

depends r-mvtnorm:

depends r-rcpp:

>=1.0.9

depends r-rcpparmadillo:

depends r-rcppprogress:

depends r-reshape:

depends r-survival:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-floral

and update with::

   mamba update r-floral

To create a new environment, run:

mamba create --name myenvname r-floral

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/r-floral:<tag>

(see `r-floral/tags`_ for valid values for ``<tag>``)

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