recipe r-gkmsvm

Imports the ‘gkmSVM’ v2.0 functionalities into R <http://www.beerlab.org/gkmsvm/> It also uses the ‘kernlab’ library (separate R package by different authors) for various SVM algorithms.

Homepage

https://CRAN.R-project.org/package=gkmSVM

License

GPL3 / GPL (>= 2)

Recipe

/r-gkmsvm/meta.yaml

package r-gkmsvm

Versions

0.79.0-1, 0.79.0-0, 0.71.0-0

Depends

• bioconductor-biocgenerics >=0.26.0,<0.28.0

• bioconductor-biostrings >=2.48.0,<2.50.0

• bioconductor-genomeinfodb

• bioconductor-genomicranges >=1.32.7,<1.34.0

• bioconductor-iranges

• bioconductor-rtracklayer

• bioconductor-s4vectors

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• r-base >=3.5.1,<3.5.2.0a0

• r-kernlab

• r-rcpp

• r-rocr

• r-seqinr

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-gkmsvm

and update with:

conda update r-gkmsvm

or use the docker container:

docker pull quay.io/biocontainers/r-gkmsvm:<tag>

(see r-gkmsvm/tags for valid values for <tag>)

Link to this page

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