recipe r-grbase

The 'gRbase' package provides graphical modelling features used by e.g. the packages 'gRain', 'gRim' and 'gRc'. 'gRbase' implements graph algorithms including (i) maximum cardinality search (for marked and unmarked graphs). (ii) moralization, (iii) triangulation, (iv) creation of junction tree. 'gRbase' facilitates array operations, 'gRbase' implements functions for testing for conditional independence. 'gRbase' illustrates how hierarchical log-linear models may be implemented and describes concept of graphical meta data. The facilities of the package are documented in the book by Højsgaard, Edwards and Lauritzen (2012, <doi:10.1007/978-1-4614-2299-0>) and in the paper by Dethlefsen and Højsgaard, (2005, <doi:10.18637/jss.v014.i17>). Please see 'citation("gRbase")' for citation details. NOTICE 'gRbase' requires that the packages graph, 'Rgraphviz' and 'RBGL' are installed from 'bioconductor'; for installation instructions please refer to the web page given below.

Homepage:

http://people.math.aau.dk/~sorenh/software/gR/

License:

GPL2 / GPL-2.0-or-later

Recipe:

/r-grbase/meta.yaml

package r-grbase

Versions:

1.8.9-2,  1.8.9-1,  1.8.9-0,  1.8.8-1,  1.8.8-0,  1.8.7-1,  1.8.7-0,  1.8_6.7-2,  1.8_6.7-1, 

1.8.9-2,  1.8.9-1,  1.8.9-0,  1.8.8-1,  1.8.8-0,  1.8.7-1,  1.8.7-0,  1.8_6.7-2,  1.8_6.7-1,  1.8_6.7-0,  1.8_3.4-6,  1.8_3.4-5,  1.8_3.4-4,  1.8_3.4-3,  1.8_3.4-2,  1.8_3.4-1,  1.8_3.4-0

Depends:

• bioconductor-graph

• bioconductor-rbgl

• bioconductor-rgraphviz

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-biocmanager

• r-igraph

• r-magrittr

• r-matrix

• r-rcpp >=0.11.1

• r-rcpparmadillo

• r-rcppeigen

Required By:

• bioconductor-fgga

• bioconductor-sponge

• bioconductor-clipper

• r-grain

• bioconductor-gmicr

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-grbase

and update with:

conda update r-grbase

or use the docker container:

docker pull quay.io/biocontainers/r-grbase:<tag>

(see r-grbase/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-grbase/README.html)