recipe r-gwpcr

Implements the necessary distributions and parameter estimation procedures for a model of amplification and high-troughput sequencing. The model is based on a mechanistic model of PCR amplification as a Galton-Watson branching process, and on Poissonan sampling to model high-throughput sequencing.

Homepage

http://www.cibiv.at/~pflug_/trumicount

License

AGPLv3

Recipe

/r-gwpcr/meta.yaml

package r-gwpcr

(downloads) docker_r-gwpcr

Versions

0.9.10-2, 0.9.10-1, 0.9.10-0, 0.9.9-0

Depends libgcc-ng

>=7.3.0

Depends r-akima

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-data.table

Depends r-statmod

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-gwpcr

and update with:

conda update r-gwpcr

or use the docker container:

docker pull quay.io/biocontainers/r-gwpcr:<tag>

(see r-gwpcr/tags for valid values for <tag>)