recipe r-histonehmm

histoneHMM is a software to analyse ChIP-seq data of histone modifications with broad genomic footprints like H3K27me3. It allows for calling modified regions in single samples as well as for calling differentially modified regions in a comparison of two samples

Homepage:

http://histonehmm.molgen.mpg.de/

Developer docs:

https://github.com/matthiasheinig/histoneHMM

License:

GPL

Recipe:

/r-histonehmm/meta.yaml

package r-histonehmm

Versions:

1.8-5,  1.8-4,  1.8-3,  1.8-2,  1.8-1,  1.8-0,  1.7.1-1,  1.7.1-0,  1.7-1, 

1.8-5,  1.8-4,  1.8-3,  1.8-2,  1.8-1,  1.8-0,  1.7.1-1,  1.7.1-0,  1.7-1,  1.7-0,  1.6-1,  1.6-0

Depends:

• bioconductor-biocstyle

• bioconductor-genomicranges

• bioconductor-rsamtools

• libgcc-ng >=12

• libgfortran-ng

• libgfortran5 >=10.4.0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-mvtnorm

• r-optparse

• r-rcpp

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-histonehmm

and update with:

conda update r-histonehmm

or use the docker container:

docker pull quay.io/biocontainers/r-histonehmm:<tag>

(see r-histonehmm/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-histonehmm/README.html)