recipe r-histonehmm

histoneHMM is a software to analyse ChIP-seq data of histone modifications with broad genomic footprints like H3K27me3. It allows for calling modified regions in single samples as well as for calling differentially modified regions in a comparison of two samples

Homepage

http://histonehmm.molgen.mpg.de/

Developer docs

https://github.com/matthiasheinig/histoneHMM

License

GPL

Recipe

/r-histonehmm/meta.yaml

package r-histonehmm

Versions

1.7.1-1, 1.7.1-0, 1.7-1, 1.7-0, 1.6-1, 1.6-0

Depends

• bioconductor-biocstyle

• bioconductor-genomicranges

• bioconductor-rsamtools

• libgcc-ng >=7.3.0

• libgfortran-ng >=7,<8.0a0

• libstdcxx-ng >=7.3.0

• r-base >=3.6,<3.7.0a0

• r-mvtnorm

• r-optparse

• r-rcpp

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-histonehmm

and update with:

conda update r-histonehmm

or use the docker container:

docker pull quay.io/biocontainers/r-histonehmm:<tag>

(see r-histonehmm/tags for valid values for <tag>)

Link to this page

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