recipe r-ic10

Implementation of the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group.

Homepage

https://CRAN.R-project.org/package=iC10

License

GPL3 / GPL-3

Recipe

/r-ic10/meta.yaml

package r-ic10

(downloads) docker_r-ic10

Versions

1.5-41.5-31.5-21.5-11.5-01.4.2-21.4.2-11.4.2-01.1.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-ic10

and update with:

conda update r-ic10

or use the docker container:

docker pull quay.io/biocontainers/r-ic10:<tag>

(see r-ic10/tags for valid values for <tag>)

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