- recipe r-ichorcna
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
- Homepage:
- License:
GPL-3.0-only
- Recipe:
- package r-ichorcna¶
-
- Versions:
0.5.0-0
,0.3.2-2
,0.3.2-1
,0.3.2-0
,0.2.0-3
,0.2.0-2
,0.2.0-1
,0.2.0-0
,0.1.0.20180710-0
- Depends:
bioconductor-bsgenome.hsapiens.ucsc.hg19
>=1.4.3,<1.5.0
bioconductor-bsgenome.hsapiens.ucsc.hg38
>=1.4.4,<1.5.0
bioconductor-genomeinfodb
>=1.26.7
bioconductor-genomicranges
>=1.42.0
bioconductor-hmmcopy
>=1.32.0
perl
>=5.32.1,<6.0a0 *_perl5
r-base
>=4.2,<4.3.0a0
r-domc
>=1.3.6
r-foreach
>=1.5.0
r-ggplot2
>=3.3.5
r-stringr
>=1.4.0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install r-ichorcna
and update with:
conda update r-ichorcna
or use the docker container:
docker pull quay.io/biocontainers/r-ichorcna:<tag>
(see r-ichorcna/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/r-ichorcna/README.html)