recipe r-ichorcna

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

Homepage:

https://github.com/GavinHaLab/ichorCNA

License:

GPL-3.0-only

Recipe:

/r-ichorcna/meta.yaml

package r-ichorcna

Versions:

0.5.0-0,  0.3.2-2,  0.3.2-1,  0.3.2-0,  0.2.0-3,  0.2.0-2,  0.2.0-1,  0.2.0-0,  0.1.0.20180710-0

Depends:

• bioconductor-bsgenome.hsapiens.ucsc.hg19 >=1.4.3,<1.5.0

• bioconductor-bsgenome.hsapiens.ucsc.hg38 >=1.4.4,<1.5.0

• bioconductor-genomeinfodb >=1.26.7

• bioconductor-genomicranges >=1.42.0

• bioconductor-hmmcopy >=1.32.0

• perl >=5.32.1,<6.0a0 *_perl5

• r-base >=4.2,<4.3.0a0

• r-domc >=1.3.6

• r-foreach >=1.5.0

• r-ggplot2 >=3.3.5

• r-optparse

• r-plyr

• r-stringr >=1.4.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-ichorcna

and update with:

conda update r-ichorcna

or use the docker container:

docker pull quay.io/biocontainers/r-ichorcna:<tag>

(see r-ichorcna/tags for valid values for <tag>)

Download stats

Link to this page

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