recipe r-jetset

On Affymetrix gene expression microarrays, a single gene may be measured by multiple probe sets. This can present a mild conundrum when attempting to evaluate a gene "signature" that is defined by gene names rather than by specific probe sets. This package provides a one-to-one mapping from gene to "best" probe set for four Affymetrix human gene expression microarrays: hgu95av2, hgu133a, hgu133plus2, and u133x3p. This package also includes the pre-calculated probe set quality scores that were used to define the mapping.

Homepage:

http://www.cbs.dtu.dk/biotools/jetset/

License:

OTHER / Artistic-2.0

Recipe:

/r-jetset/meta.yaml

package r-jetset

(downloads) docker_r-jetset

Versions:

3.4.0-13.4.0-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-jetset

and update with:

conda update r-jetset

or use the docker container:

docker pull quay.io/biocontainers/r-jetset:<tag>

(see r-jetset/tags for valid values for <tag>)

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