recipe r-monocle3

An analysis toolkit for single-cell RNA-seq.

Homepage

https://cole-trapnell-lab.github.io/monocle3/

Developer docs

https://github.com/cole-trapnell-lab/monocle3

License

MIT

Recipe

/r-monocle3/meta.yaml

package r-monocle3

Versions

1.0.0-1,  1.0.0-0,  0.2.3-1,  0.2.3-0,  0.2.2-0,  0.2.1-1,  0.2.1-0,  0.2.0-1,  0.2.0-0, 

1.0.0-1,  1.0.0-0,  0.2.3-1,  0.2.3-0,  0.2.2-0,  0.2.1-1,  0.2.1-0,  0.2.0-1,  0.2.0-0,  0.1.3-0

Depends

• bioconductor-batchelor

• bioconductor-biobase

• bioconductor-biocgenerics >=0.28

• bioconductor-delayedarray >=0.8

• bioconductor-delayedmatrixstats >=1.4

• bioconductor-limma >=3.38.3

• bioconductor-s4vectors

• bioconductor-singlecellexperiment

• bioconductor-summarizedexperiment >=1.11.5

• libgcc-ng >=9.3.0

• libstdcxx-ng >=9.3.0

• r-assertthat >=0.2.1

• r-base >=4.1,<4.2.0a0

• r-dplyr >=0.8.0.1

• r-ggplot2 >=3.1.1

• r-ggrepel >=0.8.1

• r-grr

• r-htmlwidgets >=1.3

• r-igraph >=1.2.4

• r-irlba >=2.3.3

• r-knitr

• r-leidenbase

• r-lmtest >=0.9_36

• r-mass >=7.3_51.4

• r-matrix >=1.2_17

• r-matrix.utils

• r-pbapply >=1.4

• r-pbmcapply >=1.4.1

• r-pheatmap

• r-plotly >=4.9

• r-plyr >=1.8.4

• r-proxy >=0.4_23

• r-pryr >=0.1.4

• r-pscl >=1.5.2

• r-purrr >=0.3.2

• r-rann >=2.6.1

• r-rcpp >=1.0.1

• r-rcppparallel

• r-reshape2 >=1.4.3

• r-reticulate >=1.11.1

• r-rhpcblasctl

• r-rmarkdown

• r-rsample >=0.0.5

• r-rtsne >=0.15

• r-shiny

• r-slam >=0.1_45

• r-spdep >=1.1_2

• r-speedglm >=0.3_2

• r-spelling

• r-stringr >=1.4

• r-testthat >=2.1

• r-tibble >=2.1.1

• r-tidyr >=0.8.3

• r-uwot >=0.1.3

• r-viridis >=0.5.1

Required By

• r-garnett

• monocle3-cli

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-monocle3

and update with:

conda update r-monocle3

or use the docker container:

docker pull quay.io/biocontainers/r-monocle3:<tag>

(see r-monocle3/tags for valid values for <tag>)

Download stats

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