recipe r-netcomi

Network Construction and Comparison for Microbiome Data

Homepage:

https://github.com/stefpeschel/NetCoMi

License:

GPL-3.0-only

Recipe:

/r-netcomi/meta.yaml

NetCoMi offers functions for constructing, analyzing, and comparing microbial association networks as well as dissimilarity-based networks for microbial compositional data. It also includes functionality for constructing differential association networks.

package r-netcomi

versions:

1.1.0-1,  1.1.0-0,  1.0.3-1,  1.0.3-0

depends bioconductor-biobase:

depends bioconductor-phyloseq:

depends r-base:

>=4.2,<4.3.0a0

depends r-corrplot:

depends r-dosnow:

depends r-fdrtool:

depends r-filematrix:

depends r-foreach:

depends r-gtools:

depends r-huge:

depends r-igraph:

depends r-mass:

depends r-matrix:

depends r-mixedcca:

>=1.6.2

depends r-orca:

depends r-pulsar:

depends r-qgraph:

depends r-rdpack:

depends r-snow:

depends r-spieceasi:

>=1.0.6

depends r-spring:

depends r-vegan:

depends r-wgcna:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-netcomi

and update with::

   mamba update r-netcomi

To create a new environment, run:

mamba create --name myenvname r-netcomi

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/r-netcomi:<tag>

(see `r-netcomi/tags`_ for valid values for ``<tag>``)

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