recipe r-netcomi

Network Construction and Comparison for Microbiome Data

Homepage:

https://github.com/stefpeschel/NetCoMi

License:

GPL-3.0-only

Recipe:

/r-netcomi/meta.yaml

NetCoMi offers functions for constructing, analyzing, and comparing microbial association networks as well as dissimilarity-based networks for microbial compositional data. It also includes functionality for constructing differential association networks.

package r-netcomi

Versions:

1.1.0-1,  1.1.0-0,  1.0.3-1,  1.0.3-0

Depends:

• bioconductor-biobase

• bioconductor-phyloseq

• r-base >=4.2,<4.3.0a0

• r-corrplot

• r-dosnow

• r-fdrtool

• r-filematrix

• r-foreach

• r-gtools

• r-huge

• r-igraph

• r-mass

• r-matrix

• r-mixedcca >=1.6.2

• r-orca

• r-pulsar

• r-qgraph

• r-rdpack

• r-snow

• r-spieceasi >=1.0.6

• r-spring

• r-vegan

• r-wgcna

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-netcomi

and update with:

conda update r-netcomi

or use the docker container:

docker pull quay.io/biocontainers/r-netcomi:<tag>

(see r-netcomi/tags for valid values for <tag>)

Download stats

Link to this page

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