recipe r-pscbs

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.

Homepage:

https://github.com/HenrikBengtsson/PSCBS

License:

GPL3 / GPL (>= 2)

Recipe:

/r-pscbs/meta.yaml

package r-pscbs

Versions:

0.66.0-1,  0.66.0-0,  0.65.0-5,  0.65.0-4,  0.65.0-3,  0.65.0-2,  0.65.0-1,  0.65.0-0,  0.64.0-2, 

0.66.0-1,  0.66.0-0,  0.65.0-5,  0.65.0-4,  0.65.0-3,  0.65.0-2,  0.65.0-1,  0.65.0-0,  0.64.0-2,  0.64.0-1,  0.64.0-0,  0.63.0-0,  0.61.0-0,  0.60.3-0,  0.60.0-2,  0.60.0-0

Depends:

• bioconductor-aroma.light

• bioconductor-dnacopy

• r-base >=4.2,<4.3.0a0

• r-future >=1.12.0

• r-listenv >=0.7.0

• r-matrixstats >=0.54.0

• r-r.cache >=0.13.0

• r-r.methodss3 >=1.7.1

• r-r.oo >=1.22.0

• r-r.utils >=2.8.0

Required By:

• r-aroma.core

• oncocnv

• bioconductor-purecn

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-pscbs

and update with:

conda update r-pscbs

or use the docker container:

docker pull quay.io/biocontainers/r-pscbs:<tag>

(see r-pscbs/tags for valid values for <tag>)

Download stats

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