r-pscbs

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Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.

Home https://github.com/HenrikBengtsson/PSCBS
Versions 0.60.0, 0.60.3, 0.61.0, 0.63.0
License GPL (>= 2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-pscbs

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-pscbs

and update with:

conda update r-pscbs

docker

A Docker container is available at https://quay.io/repository/biocontainers/r-pscbs.