recipe r-quilt

Read aware low coverage whole genome sequence imputation from a reference panel

Homepage

https://github.com/rwdavies/quilt

License

GPL3 / GPL3

Recipe

/r-quilt/meta.yaml

package r-quilt

Versions

0.1.9-1,  0.1.9-0

Depends

• gmp >=6.2.1,<7.0a0

• htslib >=1.12,<1.13.0a0

• libblas >=3.8.0,<4.0a0

• libgcc-ng >=9.3.0

• libstdcxx-ng >=9.3.0

• mpc >=1.1.0

• mpc >=1.1.0,<2.0a0

• mpfr >=4.0.2,<5.0a0

• r-base >=4.1,<4.2.0a0

• r-data.table >=1.11.8

• r-rcpp >=0.12.18

• r-rcpparmadillo >=0.8.600.0.0

• r-rrbgen >=0.0.6

• r-stitch >=1.6.6

• r-testthat >=2.0.0

• rsync

• samtools >=1.4

• xz >=5.2.5,<5.3.0a0

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-quilt

and update with:

conda update r-quilt

or use the docker container:

docker pull quay.io/biocontainers/r-quilt:<tag>

(see r-quilt/tags for valid values for <tag>)

Download stats

Link to this page

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