recipe r-quilt

Read aware low coverage whole genome sequence imputation from a reference panel

Homepage:

https://github.com/rwdavies/quilt

License:

GPL3 / GPL-3.0-only

Recipe:

/r-quilt/meta.yaml

package r-quilt

(downloads) docker_r-quilt

versions:
1.0.5-01.0.4-31.0.4-21.0.4-11.0.4-01.0.3-31.0.3-21.0.3-11.0.3-0

1.0.5-01.0.4-31.0.4-21.0.4-11.0.4-01.0.3-31.0.3-21.0.3-11.0.3-00.1.9-20.1.9-10.1.9-0

depends gmp:

>=6.2.1,<7.0a0

depends htslib:

>=1.18,<1.20.0a0

depends libblas:

>=3.9.0,<4.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends mpc:

>=1.1.0

depends mpc:

>=1.3.1,<2.0a0

depends mpfr:

>=4.2.0,<5.0a0

depends r-base:

>=4.3,<4.4.0a0

depends r-data.table:

>=1.11.8

depends r-optparse:

depends r-rcpp:

>=0.12.18

depends r-rcpparmadillo:

>=0.8.600.0.0

depends r-rrbgen:

>=0.0.6

depends r-stitch:

>=1.6.6

depends r-testthat:

>=2.0.0

depends rsync:

depends samtools:

>=1.4

depends xz:

>=5.2.6,<6.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install r-quilt

and update with::

   mamba update r-quilt

To create a new environment, run:

mamba create --name myenvname r-quilt

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/r-quilt:<tag>

(see `r-quilt/tags`_ for valid values for ``<tag>``)

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