recipe r-sartools

Statistical Analysis of RNA-Seq data

Homepage

https://github.com/PF2-pasteur-fr/SARTools

License

GPL-2

Recipe

/r-sartools/meta.yaml

Links

biotools: sartools

SARTools provides R tools and an environment for the statistical analysis of RNA-Seq projects load and clean data, produce figures, perform statistical analysis/testing with DESeq2 or edgeR, export results and create final report.

package r-sartools

Versions

1.7.3-1, 1.7.3-0, 1.7.2-0, 1.7.1-1, 1.7.1-0, 1.6.9-0, 1.6.8-0, 1.6.6-3, 1.6.6-2, 1.6.6-1, 1.6.3-0, 1.6.0-0, 1.5.1-0, 1.4.1-0, 1.3.2-0, 1.2.0-0

Depends

• bioconductor-deseq2 >=1.12.0

• bioconductor-edger >=3.12.0

• bioconductor-summarizedexperiment >=1.6

• r-base >=4.0,<4.1.0a0

• r-bit64

• r-blob

• r-ggally

• r-ggdendro

• r-ggplot2

• r-ggrepel

• r-gridextra

• r-kableextra

• r-knitr

• r-optparse

• r-rmarkdown >=1.4

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-sartools

and update with:

conda update r-sartools

or use the docker container:

docker pull quay.io/biocontainers/r-sartools:<tag>

(see r-sartools/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-sartools/README.html)