recipe r-sartools

Statistical Analysis of RNA-Seq data

Homepage

https://github.com/PF2-pasteur-fr/SARTools

License

GPL-2

Recipe

/r-sartools/meta.yaml

Links

biotools: sartools

SARTools provides R tools and an environment for the statistical analysis of RNA-Seq projects load and clean data, produce figures, perform statistical analysis/testing with DESeq2 or edgeR, export results and create final report.

package r-sartools

(downloads) docker_r-sartools

Versions

1.6.8-0, 1.6.6-3, 1.6.6-2, 1.6.6-1, 1.6.3-0, 1.6.0-0, 1.5.1-0, 1.4.1-0, 1.3.2-0, 1.2.0-0

Depends bioconductor-deseq2

>=1.12.0

Depends bioconductor-edger

>=3.12.0

Depends bioconductor-summarizedexperiment

>=1.6

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-bit64

Depends r-blob

Depends r-knitr

Depends r-rmarkdown

>=1.4

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-sartools

and update with:

conda update r-sartools

or use the docker container:

docker pull quay.io/biocontainers/r-sartools:<tag>

(see r-sartools/tags for valid values for <tag>)