recipe r-sartools

Statistical Analysis of RNA-Seq data

Homepage:

https://github.com/PF2-pasteur-fr/SARTools

License:

GPL-2

Recipe:

/r-sartools/meta.yaml

Links:

biotools: sartools

SARTools provides R tools and an environment for the statistical analysis of RNA-Seq projects load and clean data, produce figures, perform statistical analysis/testing with DESeq2 or edgeR, export results and create final report.

package r-sartools

Versions:

1.8.1-1,  1.8.1-0,  1.8.0-0,  1.7.4-0,  1.7.3-3,  1.7.3-2,  1.7.3-1,  1.7.3-0,  1.7.2-0, 

1.8.1-1,  1.8.1-0,  1.8.0-0,  1.7.4-0,  1.7.3-3,  1.7.3-2,  1.7.3-1,  1.7.3-0,  1.7.2-0,  1.7.1-1,  1.7.1-0,  1.6.9-0,  1.6.8-0,  1.6.6-3,  1.6.6-2,  1.6.6-1,  1.6.3-0,  1.6.0-0,  1.5.1-0,  1.4.1-0,  1.3.2-0,  1.2.0-0

Depends:

• bioconductor-deseq2 >=1.32.0

• bioconductor-edger >=3.34.0

• bioconductor-summarizedexperiment >=1.6

• r-ashr >=2.2-54

• r-base >=4.2,<4.3.0a0

• r-bit64

• r-blob

• r-ggally

• r-ggdendro

• r-ggplot2 >=3.3.0

• r-ggrepel

• r-gridextra

• r-kableextra

• r-knitr

• r-optparse

• r-rmarkdown >=1.4

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-sartools

and update with:

conda update r-sartools

or use the docker container:

docker pull quay.io/biocontainers/r-sartools:<tag>

(see r-sartools/tags for valid values for <tag>)

Download stats

Link to this page

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