recipe r-scdc

SCDC adopts an ENSEMBLE method to integrate deconvolution results from different scRNA-seq datasets that are produced in different laboratories and at different times, implicitly addressing the batch-effect confounding.

Homepage

https://github.com/meichendong/SCDC

License

MIT / MIT

Recipe

/r-scdc/meta.yaml

Links

doi: 10.1093/bib/bbz166

package r-scdc

Versions

0-2,  0-1,  0-0

Depends

• bioconductor-biobase >=2.50.0

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• r-base >=4.0.5

• r-cowplot >=1.1.1

• r-ggplot2 >=3.3.5

• r-l1pack >=0.38.196

• r-nnls >=1.4

• r-pheatmap >=1.0.12

• r-rcpp >=1.0.7

• r-reshape >=0.8.8

• xbioc >=0.1.19

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-scdc

and update with:

conda update r-scdc

or use the docker container:

docker pull quay.io/biocontainers/r-scdc:<tag>

(see r-scdc/tags for valid values for <tag>)

Download stats

Link to this page

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