recipe r-sigqc

Provides gene signature quality control metrics in publication ready plots. Namely, enables the visualization of properties such as expression, variability, correlation, and comparison of methods of standardisation and scoring metrics.

Homepage

https://CRAN.R-project.org/package=sigQC

License

OTHER / file LICENSE (Restricts use)

Recipe

/r-sigqc/meta.yaml

package r-sigqc

Versions

0.1.21-3,  0.1.21-2,  0.1.21-1,  0.1.21-0,  0.1.14-0

Depends

• bioconductor-complexheatmap

• bioconductor-gsva

• bioconductor-rankprod

• r-base >=4.0,<4.1.0a0

• r-biclust

• r-circlize

• r-class

• r-cluster

• r-fmsb

• r-gplots

• r-gridgraphics

• r-kernsmooth

• r-lattice

• r-mass

• r-mclust

• r-moments

• r-nnet

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-sigqc

and update with:

conda update r-sigqc

or use the docker container:

docker pull quay.io/biocontainers/r-sigqc:<tag>

(see r-sigqc/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-sigqc/README.html)