recipe r-swamp

Collection of functions to connect the structure of the data with the information on the samples. Three types of associations are covered: 1. linear model of principal components. 2. hierarchical clustering analysis. 3. distribution of features-sample annotation associations. Additionally, the inter-relation between sample annotations can be analyzed. Simple methods are provided for the correction of batch effects and removal of principal components.

Homepage

https://CRAN.R-project.org/package=swamp

License

GPL3 / GPL (>= 2)

Recipe

/r-swamp/meta.yaml

package r-swamp

(downloads) docker_r-swamp

Versions

1.5.1-31.5.1-21.5.1-11.5.1-01.4.1-31.4.1-21.4.1-11.4.1-01.3.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-swamp

and update with:

conda update r-swamp

or use the docker container:

docker pull quay.io/biocontainers/r-swamp:<tag>

(see r-swamp/tags for valid values for <tag>)

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