recipe r-txrevise

Construct custom transcript annotations for Salmon and kallisto

Homepage

https://github.com/kauralasoo/txrevise

License

Apache / Apache 2.0

Recipe

/r-txrevise/meta.yaml

Links

doi: 10.7554/eLife.41673

txrevise R package provides utilites to pre-process Ensembl transcript annotations to quantify differences in transcript strucuture (alternative promoters, alternative splicing, alternative poly-adenylation) either between experimental conditions or genotypes (e.g. for transcript usage quntitative trait loci (tuQTL) mapping).

package r-txrevise

(downloads) docker_r-txrevise

Versions

0.1-10.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-txrevise

and update with:

conda update r-txrevise

or use the docker container:

docker pull quay.io/biocontainers/r-txrevise:<tag>

(see r-txrevise/tags for valid values for <tag>)