recipe r-umianalyzer

Tools for analyzing sequencing data containing unique molecular identifiers generated by 'UMIErrorCorrect' (<https://github.com/stahlberggroup/umierrorcorrect>).

Homepage:

https://github.com/sfilges/umiAnalyzer

License:

GPL3 / GPL-3.0-only

Recipe:

/r-umianalyzer/meta.yaml

package r-umianalyzer

Versions:

1.0.0-1,  1.0.0-0

Depends:

• bioconductor-rsamtools >=1.32.3

• r-base >=4.2,<4.3.0a0

• r-biocmanager

• r-dplyr >=0.7.5

• r-dt >=0.19

• r-forcats >=0.5.0

• r-ggplot2 >=2.2.1

• r-gridextra >=2.3

• r-magrittr >=1.5

• r-pheatmap >=1.0.12

• r-plotly >=4.9.2.1

• r-readr >=1.1.1

• r-scales >=1.1.0

• r-shiny >=1.7.1

• r-shinydashboard >=0.7.2

• r-shinyfiles >=0.9.0

• r-shinywidgets >=0.6.2

• r-stringr >=1.4.0

• r-tibble >=1.4.2

• r-tidyr >=0.8.1

• r-viridis >=0.5.1

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-umianalyzer

and update with:

conda update r-umianalyzer

or use the docker container:

docker pull quay.io/biocontainers/r-umianalyzer:<tag>

(see r-umianalyzer/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/r-umianalyzer/README.html)