recipe r-workflowscriptscommon

Common functions for making R function wapper scripts. Functions in R packages are hard to call when building workflows outside of R, so this package is used by other packages (e.g. r-seurat-scripts) to add sets of simple wrappers with robust argument parsing.

Homepage:

https://github.com/ebi-gene-expression-group/workflowscriptscommon

License:

GPL / GPL-3

Recipe:

/r-workflowscriptscommon/meta.yaml

package r-workflowscriptscommon

Versions:

0.0.8-2,  0.0.8-1,  0.0.8-0,  0.0.7-3,  0.0.7-2,  0.0.7-1,  0.0.7-0,  0.0.6-0,  0.0.5-0, 

0.0.8-2,  0.0.8-1,  0.0.8-0,  0.0.7-3,  0.0.7-2,  0.0.7-1,  0.0.7-0,  0.0.6-0,  0.0.5-0,  0.0.4-1,  0.0.4-0,  0.0.2-0,  0.0.1-0

Depends:

• r-base >=4.0,<4.1.0a0

• r-optparse

Required By:

• cell-types-analysis

• sc3-scripts

• bioconductor-singlecellexperiment-scripts

• atlas-data-import

• scmap-cli

• seurat-scripts

• dropletutils-scripts

• singlecellnet-cli

• tximport-scripts

• scpred-cli

• scater-scripts

• garnett-cli

• scran-cli

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-workflowscriptscommon

and update with:

conda update r-workflowscriptscommon

or use the docker container:

docker pull quay.io/biocontainers/r-workflowscriptscommon:<tag>

(see r-workflowscriptscommon/tags for valid values for <tag>)

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