recipe rad_haplotyper

A program for building SNP haplotypes from RAD sequencing data

Homepage

https://github.com/chollenbeck/rad_haplotyper

License

Perl

Recipe

/rad_haplotyper/meta.yaml

package rad_haplotyper

(downloads) docker_rad_haplotyper

Versions

1.1.9-1, 1.1.9-0, 1.1.7-0, 1.1.6-0

Depends ddocent

Depends libgcc-ng

>=4.9

Depends perl

>=5.26.2,<5.26.3.0a0

Depends perl-app-cpanminus

Depends perl-bio-cigar

Depends perl-bio-db-sam

Depends perl-bioperl

Depends perl-data-dumper

Depends perl-getopt-long

Depends perl-list-moreutils

Depends perl-module-build

Depends perl-parallel-forkmanager

Depends perl-pod-usage

Depends perl-term-progressbar

Depends perl-vcftools-vcf

<0.700

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install rad_haplotyper

and update with:

conda update rad_haplotyper

or use the docker container:

docker pull quay.io/biocontainers/rad_haplotyper:<tag>

(see rad_haplotyper/tags for valid values for <tag>)