recipe ragtag

Fast reference-guided genome assembly scaffolding

Homepage

https://github.com/malonge/RagTag

Documentation

https://github.com/malonge/RagTag/wiki

License

MIT / MIT

Recipe

/ragtag/meta.yaml

Links

doi: 10.5281/zenodo.3887139

package ragtag

Versions

2.1.0-0,  2.0.1-0,  2.0.0-0,  1.1.1-0,  1.1.0-0,  1.0.2-0,  1.0.1-1,  1.0.1-0,  1.0.0-0

Depends

• intervaltree

• minimap2

• mummer

• networkx

• numpy

• pysam

• python >3

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ragtag

and update with:

conda update ragtag

or use the docker container:

docker pull quay.io/biocontainers/ragtag:<tag>

(see ragtag/tags for valid values for <tag>)

Download stats

Link to this page

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