recipe rasusa

Randomly subsample sequencing reads to a specified coverage

Homepage:

https://github.com/mbhall88/rasusa

License:

MIT

Recipe:

/rasusa/meta.yaml

package rasusa

(downloads) docker_rasusa

versions:
0.8.0-0,  0.7.1-2,  0.7.1-1,  0.7.1-0,  0.7.0-1,  0.7.0-0,  0.6.1-1,  0.6.1-0,  0.6.0-0, 

0.8.0-0,  0.7.1-2,  0.7.1-1,  0.7.1-0,  0.7.0-1,  0.7.0-0,  0.6.1-1,  0.6.1-0,  0.6.0-0,  0.5.0-0,  0.4.2-0,  0.4.1-0,  0.3.0-1,  0.3.0-0,  0.2.0-0,  0.1.0-0

depends libgcc-ng:

>=12

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rasusa

and update with::

   mamba update rasusa

To create a new environment, run:

mamba create --name myenvname rasusa

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rasusa:<tag>

(see `rasusa/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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