- recipe reago
An assembly tool for 16S ribosomal RNA recovery from metagenomic data
- package reago¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install reago and update with:: mamba update reago
To create a new environment, run:
mamba create --name myenvname reago
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/reago:<tag> (see `reago/tags`_ for valid values for ``<tag>``)