recipe recur

Detect recurrent amino-acid substitutions from multiple-sequence alignments.

Homepage:

https://github.com/OrthoFinder/RECUR

Documentation:

https://orthofinder.github.io/RECUR

License:

GPL3 / GPL-3.0-only

Recipe:

/recur/meta.yaml

package recur

versions:

1.0.0-0

depends dendropy:

depends iqtree:

>=2,<3

depends numpy:

depends psutil:

depends python:

>=3.9,<3.13

depends pyyaml:

depends rich:

depends types-pyyaml:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install recur

and update with::

   mamba update recur

To create a new environment, run:

mamba create --name myenvname recur

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/recur:<tag>

(see `recur/tags`_ for valid values for ``<tag>``)

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