recipe referenceseeker

Rapid determination of appropriate reference genomes.

Homepage:

https://github.com/oschwengers/referenceseeker

License:

GPL / GPLv3

Recipe:

/referenceseeker/meta.yaml

Links:

biotools: referenceseeker

package referenceseeker

Versions:

1.8.0-0,  1.7.3-0,  1.7.1-0,  1.6.4-0,  1.6.3-0,  1.6.2-0,  1.6.1-0,  1.6-0,  1.5-0, 

1.8.0-0,  1.7.3-0,  1.7.1-0,  1.6.4-0,  1.6.3-0,  1.6.2-0,  1.6.1-0,  1.6-0,  1.5-0,  1.4-0,  1.3-0,  1.2.0-0

Depends:

• biopython >=1.78

• mash >=2.3.0

• mummer4 >=4.0.0beta2

• python >=3

• xopen >=1.1.0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install referenceseeker

and update with:

conda update referenceseeker

or use the docker container:

docker pull quay.io/biocontainers/referenceseeker:<tag>

(see referenceseeker/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/referenceseeker/README.html)