recipe referenceseeker

Rapid determination of appropriate reference genomes.

Homepage:

https://github.com/oschwengers/referenceseeker

License:

GPL / GPLv3

Recipe:

/referenceseeker/meta.yaml

Links:

biotools: referenceseeker

package referenceseeker

versions:

1.8.0-0,  1.7.3-0,  1.7.1-0,  1.6.4-0,  1.6.3-0,  1.6.2-0,  1.6.1-0,  1.6-0,  1.5-0, 

1.8.0-0,  1.7.3-0,  1.7.1-0,  1.6.4-0,  1.6.3-0,  1.6.2-0,  1.6.1-0,  1.6-0,  1.5-0,  1.4-0,  1.3-0,  1.2.0-0

depends biopython:

>=1.78

depends mash:

>=2.3.0

depends mummer4:

>=4.0.0beta2

depends python:

>=3

depends xopen:

>=1.1.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install referenceseeker

and update with::

   mamba update referenceseeker

To create a new environment, run:

mamba create --name myenvname referenceseeker

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/referenceseeker:<tag>

(see `referenceseeker/tags`_ for valid values for ``<tag>``)

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