recipe refgenieserver

This server provides both a web interface and a RESTful API. Users may explore and download archived indexes from the web interface or develop tools that programmatically query the API.

Homepage:

https://refgenie.databio.org/

License:

BSD / BSD-2-Clause

Recipe:

/refgenieserver/meta.yaml

package refgenieserver

(downloads) docker_refgenieserver

versions:
0.7.0-0,  0.6.0-0,  0.5.1-0,  0.5.0-0,  0.4.4-0,  0.4.3-0,  0.4.2-0,  0.4.1-0,  0.4.0-0, 

0.7.0-0,  0.6.0-0,  0.5.1-0,  0.5.0-0,  0.4.4-0,  0.4.3-0,  0.4.2-0,  0.4.1-0,  0.4.0-0,  0.3.4-0

depends aiofiles:

depends fastapi:

depends jinja2:

depends logmuse:

>=0.2

depends python:

>=3.6

depends refgenconf:

>=0.10.0

depends ubiquerg:

>=0.6.1

depends uvicorn:

>=0.7.1

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install refgenieserver

and update with::

   mamba update refgenieserver

To create a new environment, run:

mamba create --name myenvname refgenieserver

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/refgenieserver:<tag>

(see `refgenieserver/tags`_ for valid values for ``<tag>``)

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Link to this page

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