- recipe refseq_masher
refseq_masher finds what NCBI RefSeq genomes match or are contained within your sequence data using Mash
- package refseq_masher¶
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install refseq_masher and update with:: mamba update refseq_masher
To create a new environment, run:
mamba create --name myenvname refseq_masher
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/refseq_masher:<tag> (see `refseq_masher/tags`_ for valid values for ``<tag>``)