recipe refseq_masher

refseq_masher finds what NCBI RefSeq genomes match or are contained within your sequence data using Mash

Homepage:

https://github.com/phac-nml/refseq_masher

License:

Apache / Apache 2.0

Recipe:

/refseq_masher/meta.yaml

package refseq_masher

Versions:

0.1.2-0,  0.1.1-2,  0.1.1-1,  0.1.1-0,  0.1.0-0

Depends:

• click

• mash >=2.0

• numpy >=1.12.1

• pandas >=0.20.1

• python >=3

Required By:

• bart

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install refseq_masher

and update with:

conda update refseq_masher

or use the docker container:

docker pull quay.io/biocontainers/refseq_masher:<tag>

(see refseq_masher/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/refseq_masher/README.html)