recipe relocate2

a high resolution transposable element insertion sites mapping tool for population resequencing

Homepage

https://github.com/stajichlab/RelocaTE2

License

unknown

Recipe

/relocate2/meta.yaml

package relocate2

(downloads) docker_relocate2

Versions

2.0.1-2, 2.0.1-0, 2.0.0-1

Depends bedtools

==2.26.0-0

Depends blat

==35

Depends bowtie2

==2.2.8

Depends bwa

==0.6.2-0

Depends perl

>=5.10.0

Depends pysam

==0.9.0

Depends python

==2.7.5

Depends samtools

==1.3-0

Depends seqtk

==1.2-0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install relocate2

and update with:

conda update relocate2

or use the docker container:

docker pull quay.io/biocontainers/relocate2:<tag>

(see relocate2/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/relocate2/README.html)