recipe repdenovo

REPdenovo is designed for constructing repeats directly from sequence reads.

Homepage

https://github.com/Reedwarbler/REPdenovo

License

MIT

Recipe

/repdenovo/meta.yaml

package repdenovo

Versions

0.0.1-2,  0.0.1-1,  0.0.1-0

Depends

• bamtools >=2.5.1,<2.5.2.0a0

• bwa

• kmer-jellyfish

• libgcc-ng >=10.3.0

• libstdcxx-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

• python

• velvet

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install repdenovo

and update with:

conda update repdenovo

or use the docker container:

docker pull quay.io/biocontainers/repdenovo:<tag>

(see repdenovo/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/repdenovo/README.html)