recipe repeatmasker

RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.

Homepage:

https://www.repeatmasker.org

License:

Open Software License v2.1

Recipe:

/repeatmasker/meta.yaml

Links:

biotools: RepeatMasker

package repeatmasker

Versions:

4.1.5-0,  4.1.2.p1-1,  4.1.2.p1-0,  4.1.1-2,  4.1.1-1,  4.1.1-0,  4.1.0-0,  4.0.9_p2-2,  4.0.9_p2-1, 

4.1.5-0,  4.1.2.p1-1,  4.1.2.p1-0,  4.1.1-2,  4.1.1-1,  4.1.1-0,  4.1.0-0,  4.0.9_p2-2,  4.0.9_p2-1,  4.0.9_p2-0,  4.0.8-14,  4.0.8-13,  4.0.7-13,  4.0.7-11,  4.0.7-10,  4.0.6-10,  4.0.6-9,  4.0.6-8,  4.0.6-7,  4.0.6-6,  4.0.6-5,  4.0.6-4

Depends:

• h5py

• hmmer

• perl >=5.32.1,<6.0a0 *_perl5

• rmblast

• trf

• wget

Required By:

• repeatmodeler

• ltr_retriever

• maker

• telr

• dfam

• nanomonsv

• ngs_te_mapper2

• mgca

• gridss

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install repeatmasker

and update with:

conda update repeatmasker

or use the docker container:

docker pull quay.io/biocontainers/repeatmasker:<tag>

(see repeatmasker/tags for valid values for <tag>)

Download stats

Link to this page

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