recipe rgt

Toolkit to perform regulatory genomics data analysis

Homepage:

http://www.regulatory-genomics.org

Documentation:

http://www.regulatory-genomics.org/rgt/tutorial/

Developer docs:

https://github.com/CostaLab/reg-gen

License:

GPL / GPL

Recipe:

/rgt/meta.yaml

package rgt

Versions:

1.0.0-0,  0.12.3-3,  0.12.3-2,  0.12.3-1,  0.12.3-0,  0.12.2-0,  0.11.4-2,  0.11.4-1,  0.11.4-0

Depends:

• adjusttext

• biopython

• fisher

• hmmlearn 0.2.2

• htseq

• joblib

• libgcc-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• logomaker

• matplotlib-base

• matplotlib-venn

• moods

• mpmath

• natsort

• numpy

• pandas

• pybigwig

• pysam >=0.20.0

• python >=3.7,<3.8.0a0

• python_abi 3.7.* *_cp37m

• pyx

• scikit-learn

• scipy

• seaborn

• ucsc-bedgraphtobigwig

• ucsc-bedtobigbed

• ucsc-bigbedtobed

• ucsc-bigwigmerge

• ucsc-wigtobigwig

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install rgt

and update with:

conda update rgt

or use the docker container:

docker pull quay.io/biocontainers/rgt:<tag>

(see rgt/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rgt/README.html)