recipe rgt

Toolkit to perform regulatory genomics data analysis

Homepage:

http://www.regulatory-genomics.org

Documentation:

http://www.regulatory-genomics.org/rgt/tutorial/

Developer docs:

https://github.com/CostaLab/reg-gen

License:

GPL / GPL

Recipe:

/rgt/meta.yaml

package rgt

Versions:

0.12.3-3,  0.12.3-2,  0.12.3-1,  0.12.3-0,  0.12.2-0,  0.11.4-2,  0.11.4-1,  0.11.4-0

Depends:

• biopython >=1.64

• configparser

• fisher >=0.1.5

• hmmlearn >=0.2

• htseq

• libgcc-ng >=10.3.0

• libzlib >=1.2.11,<1.3.0a0

• logomaker

• matplotlib >=1.1.0

• matplotlib-venn

• moods

• mpmath

• natsort

• numpy

• pandas

• pybigwig

• pysam >=0.12.0

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• pyvcf

• pyx

• scikit-learn >=0.19.0,<0.20.0

• scipy >=1.0.0

• ucsc-bedgraphtobigwig

• ucsc-bedtobigbed

• ucsc-bigbedtobed

• ucsc-bigwigmerge

• ucsc-wigtobigwig

• zlib >=1.2.11,<1.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install rgt

and update with:

conda update rgt

or use the docker container:

docker pull quay.io/biocontainers/rgt:<tag>

(see rgt/tags for valid values for <tag>)

Download stats

Link to this page

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