recipe rgt

Toolkit to perform regulatory genomics data analysis

Homepage

http://www.regulatory-genomics.org

Documentation

http://www.regulatory-genomics.org/rgt/tutorial/

Developer docs

https://github.com/CostaLab/reg-gen

License

GPL / GPL

Recipe

/rgt/meta.yaml

package rgt

Versions

0.12.3-0, 0.12.2-0, 0.11.4-2, 0.11.4-1, 0.11.4-0

Depends

• biopython >=1.64

• configparser

• fisher >=0.1.5

• hmmlearn >=0.2

• htseq

• libgcc-ng >=7.3.0

• logomaker

• matplotlib >=1.1.0

• matplotlib-venn

• moods

• mpmath

• natsort

• numpy

• pandas

• pybigwig

• pysam >=0.12.0

• python >=2.7,<2.8.0a0

• pyvcf

• pyx

• scikit-learn >=0.19.0,<0.20.0

• scipy >=1.0.0

• ucsc-bedgraphtobigwig

• ucsc-bedtobigbed

• ucsc-bigbedtobed

• ucsc-bigwigmerge

• ucsc-wigtobigwig

• zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install rgt

and update with:

conda update rgt

or use the docker container:

docker pull quay.io/biocontainers/rgt:<tag>

(see rgt/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rgt/README.html)