recipe rhocall

Call regions of homozygosity and make tentative UPD calls.

Homepage:

https://github.com/dnil/rhocall

Developer docs:

https://github.com/dnil

License:

GPL / GPLv3

Recipe:

/rhocall/meta.yaml

package rhocall

versions:

0.5.1-2,  0.5.1-1,  0.5.1-0

depends click:

depends cyvcf2:

depends libgcc-ng:

>=12

depends matplotlib-base:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends tk:

depends xorg-libx11:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rhocall

and update with::

   mamba update rhocall

To create a new environment, run:

mamba create --name myenvname rhocall

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rhocall:<tag>

(see `rhocall/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an badge with the following MarkDown:

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