recipe riboraptor

Python package to analyse ribosome profiling data

Homepage

https://github.com/saketkc/riboraptor

Documentation

https://saketkc.github.io/riboraptor

License

BSD / BSD License

Recipe

/riboraptor/meta.yaml

package riboraptor

(downloads) docker_riboraptor

Versions

0.2.2-1, 0.2.2-0

Depends biopython

>=1.70

Depends click

>=6.0

Depends click-help-colors

>=0.3

Depends fastqc

Depends htseq

>=0.9.1

Depends matplotlib

>=2.1.0

Depends numpy

>=1.11.0

Depends pandas

>=0.20.3

Depends pybedtools

>=0.7.10

Depends pybigwig

>=0.2.8

Depends pyfaidx

>=0.5.0

Depends pysam

>=0.11.2.2

Depends python

>=3.5,<3.6.0a0

Depends scipy

>=0.19.1

Depends seaborn

>=0.8.1

Depends six

>=1.11.0

Depends snakemake

Depends sra-tools

Depends star

Depends statsmodels

>=0.8.0

Depends trim-galore

Depends ucsc-bedgraphtobigwig

Depends ucsc-bedsort

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install riboraptor

and update with:

conda update riboraptor

or use the docker container:

docker pull quay.io/biocontainers/riboraptor:<tag>

(see riboraptor/tags for valid values for <tag>)