recipe ribotricer

Python package to detect translating ORF from Ribo-seq data

Homepage

https://github.com/smithlabcode/ribotricer

License

GPL3 / GNU General Public v3 (GPLv3)

Recipe

/ribotricer/meta.yaml

Ribotricer is a method for detecting actively-translating ORFs by directly leveraging the three-nucleotide periodicity of Ribo-seq data. It accurately identifies both short and long active ORFs.

package ribotricer

Versions

1.3.2-0,  1.3.1-0,  1.3.0-0,  1.2.0-0,  1.1.1-0,  1.1.0-0,  1.0.3-0,  1.0.2-0

Depends

• click >=6.0

• click-help-colors >=0.3

• matplotlib-base >=2.1.0

• numpy >=1.11.0

• pandas >=0.20.3

• pyfaidx >=0.5.0

• pysam >=0.11.2.2

• python >3

• quicksect >=0.2.0

• scipy >=0.19.1

• tqdm >=4.23.4

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install ribotricer

and update with:

conda update ribotricer

or use the docker container:

docker pull quay.io/biocontainers/ribotricer:<tag>

(see ribotricer/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ribotricer/README.html)