recipe rnabloom

Java tool for RNA-seq assembly

Homepage:

https://github.com/bcgsc/RNA-Bloom

Documentation:

https://github.com/bcgsc/RNA-Bloom/blob/master/README.md

License:

GPL-3.0

Recipe:

/rnabloom/meta.yaml

Links:

doi: 10.1101/gr.260174.119, doi: 10.1038/s41467-023-38553-y

RNA-Bloom is a reference-free and reference-guided transcriptome assembly tool for short and long RNA-seq reads.

package rnabloom

Versions:

2.0.1-1,  2.0.1-0,  2.0.0-0,  1.4.3-0,  1.3.1-2,  1.3.1-1,  1.3.1-0,  1.3.0-0,  1.2.3-0, 

2.0.1-1,  2.0.1-0,  2.0.0-0,  1.4.3-0,  1.3.1-2,  1.3.1-1,  1.3.1-0,  1.3.0-0,  1.2.3-0,  1.2.2-0

Depends:

• minimap2

• ntcard >=1.2.1

• openjdk >=11

• racon

Required By:

• pavfinder

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install rnabloom

and update with:

conda update rnabloom

or use the docker container:

docker pull quay.io/biocontainers/rnabloom:<tag>

(see rnabloom/tags for valid values for <tag>)

Download stats

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