recipe rnablueprint

The RNAblueprint library solves the problem of uniformly sampling RNA/DNA sequences compatible to multiple structural constraints and sequence constraints.

Homepage:

https://github.com/ViennaRNA/RNAblueprint

License:

GPL3

Recipe:

/rnablueprint/meta.yaml

Links:

doi: 10.1093/bioinformatics/btx263

package rnablueprint

versions:

1.3.2-6,  1.3.2-5,  1.3.2-4,  1.3.2-3,  1.3.2-2,  1.3.2-1,  1.3.2-0,  1.3.0-1,  1.3.0-0, 

1.3.2-6,  1.3.2-5,  1.3.2-4,  1.3.2-3,  1.3.2-2,  1.3.2-1,  1.3.2-0,  1.3.0-1,  1.3.0-0,  1.2.3-0,  1.2.2-0,  1.2-1,  1.2-0

depends boost-cpp:

>=1.78.0,<1.78.1.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends perl:

>=5.32.1,<5.33.0a0 *_perl5

depends python_abi:

3.10.* *_cp310

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rnablueprint

and update with::

   mamba update rnablueprint

To create a new environment, run:

mamba create --name myenvname rnablueprint

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rnablueprint:<tag>

(see `rnablueprint/tags`_ for valid values for ``<tag>``)

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