recipe rnabridge-align

A tool to construct the alignments of entire fragments given the alignments of paired-end reads.

Homepage:

https://github.com/Shao-Group/rnabridge-align

License:

BSD-3-Clause

Recipe:

/rnabridge-align/meta.yaml

package rnabridge-align

versions:

1.0.1-6,  1.0.1-5,  1.0.1-4,  1.0.1-3,  1.0.1-2,  1.0.1-1,  1.0.1-0

depends boost-cpp:

>=1.78.0,<1.78.1.0a0

depends htslib:

>=1.17,<1.21.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install rnabridge-align

and update with::

   mamba update rnabridge-align

To create a new environment, run:

mamba create --name myenvname rnabridge-align

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/rnabridge-align:<tag>

(see `rnabridge-align/tags`_ for valid values for ``<tag>``)

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