recipe rodeo

RODEO evaluates one or many genes, characterizing a gene neighborhood based on the presence of profile hidden Markov models (pHMMs). Because RiPP precursor peptides are small and often evade annotation in sequence databases, RODEO can also manually translate small ORFs (open reading frames). A combination of support vector machine (SVM) learning and motif analysis can be used to scan unannotated intergenic regions for RiPP precursors.

Homepage

http://ripp.rodeo/index.html

License

AGPL

Recipe

/rodeo/meta.yaml

package rodeo

(downloads) docker_rodeo

Versions

2.3.3-12.3.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install rodeo

and update with:

conda update rodeo

or use the docker container:

docker pull quay.io/biocontainers/rodeo:<tag>

(see rodeo/tags for valid values for <tag>)

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