recipe rop

The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.

Homepage

https://github.com/smangul1/rop

License

GPL-3.0

Recipe

/rop/meta.yaml

package rop

Versions

1.1.2-2,  1.1.2-1,  1.1.2-0,  1.1.1-0

Depends

• biopython

• blast

• bowtie2

• bwa

• fastx_toolkit

• intervaltree

• kmer-jellyfish

• libgcc-ng >=7.5.0

• numpy

• pandas

• pysam

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• samtools

• scikit-learn

• scipy

• tophat

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install rop

and update with:

conda update rop

or use the docker container:

docker pull quay.io/biocontainers/rop:<tag>

(see rop/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/rop/README.html)