recipe saffrontree

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

Homepage

https://github.com/sanger-pathogens/saffrontree

License

GNU General Public License v3 (GPLv3)

Recipe

/saffrontree/meta.yaml

package saffrontree

(downloads) docker_saffrontree

Versions

0.1.2-0

Depends biopython

Depends dendropy

>=4.1.0

Depends kmc

>=2.3.0

Depends libgcc

Depends pyfastaq

>=3.12.0

Depends python

3.5*

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install saffrontree

and update with:

conda update saffrontree

or use the docker container:

docker pull quay.io/biocontainers/saffrontree:<tag>

(see saffrontree/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/saffrontree/README.html)