recipe saffrontree

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

Homepage

https://github.com/sanger-pathogens/saffrontree

License

GNU General Public License v3 (GPLv3)

Recipe

/saffrontree/meta.yaml

Links

doi: 10.21105/joss.00243

package saffrontree

Versions

0.1.2-0

Depends

• biopython

• dendropy >=4.1.0

• kmc >=2.3.0

• libgcc

• pyfastaq >=3.12.0

• python 3.5*

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install saffrontree

and update with:

conda update saffrontree

or use the docker container:

docker pull quay.io/biocontainers/saffrontree:<tag>

(see saffrontree/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/saffrontree/README.html)