Package Recipe 'saffrontree'

recipe saffrontree

SaffronTree: Reference free rapid phylogenetic tree construction from raw read data

Homepage:: https://github.com/sanger-pathogens/saffrontree
License:: GNU General Public License v3 (GPLv3)
Recipe:: /saffrontree/meta.yaml
Links:: doi: 10.21105/joss.00243

package saffrontree¶

Versions:

0.1.2-0

Depends:

biopython
dendropy >=4.1.0
kmc >=2.3.0
libgcc
pyfastaq >=3.12.0
python 3.5*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install saffrontree

and update with:

conda update saffrontree

or use the docker container:

docker pull quay.io/biocontainers/saffrontree:<tag>

(see saffrontree/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/saffrontree/README.html)